I shut down this server 208.100.20.18:20100, reuploaded the 4 files from the other server and then restarted this one. I am getting  
CODE
PunkBuster Client: [slot] [Type] [Mask] [Name]
PunkBuster Client: 1 1 63.171.64.245 pbbans 
PunkBuster Client: End of PB UCON Profile List (1 Entry) 
 when I use the pb_sv_uconlist command. Hopefully this works.